PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015878794.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 279aa    MW: 31558.4 Da    PI: 8.2586
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015878794.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-183483255
             AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++ GVr+++ +g+WvAeI+d      k+ r +lg++ taeeAa+a+++a+  l+g
  XP_015878794.1 34 KFVGVRQRP-SGKWVAEIKDtT----KKIRMWLGTYNTAEEAARAYDEAAFLLRG 83
                    799******.7*********33....36**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-363497IPR001471AP2/ERF domain
CDDcd000182.67E-323493No hitNo description
Gene3DG3DSA:3.30.730.103.7E-283491IPR001471AP2/ERF domain
PfamPF008472.3E-133483IPR001471AP2/ERF domain
PROSITE profilePS5103220.313491IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-203492IPR016177DNA-binding domain
PRINTSPR003671.6E-73546IPR001471AP2/ERF domain
PRINTSPR003671.6E-75773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MERHCHSQER QKGVLANKKS NYFKERTTHN YKNKFVGVRQ RPSGKWVAEI KDTTKKIRMW  60
LGTYNTAEEA ARAYDEAAFL LRGSNTRTNF AIHVSTNSPL SLKIRNLLNY KKGPSKQAAS  120
TTNIIKPSIK PSTVISSSTS ITNNPTGYSF HYNAGTSFTS PSACKNVYGQ MFEDAYKPDM  180
SYCIEELQQA TPYLDYSWPC SVGFDHQLQL NHEGTELVKG FDLSSNKAEL ELTEMELSKV  240
ERQISASLYG VNECMENIAY DGSDAPWDLY TFCQLHCST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-163594363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-163596668ATERF1
3gcc_A4e-163596668ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015878794.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11
TrEMBLW9SBA42e-82W9SBA4_9R
STRINGVIT_06s0004g00490.t011e-72(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.18e-31related to AP2 11